 Ryan C. Thompson
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1dc645cfe3
Minor revisions
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5 gadi atpakaļ |
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Ryan C. Thompson
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02ae2697b9
Group Future Directions based on wihch chapter they apply to
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5 gadi atpakaļ |
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Ryan C. Thompson
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e3e918bdc9
Improve the title for Chapter 3
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Ryan C. Thompson
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21eb5d0998
Chapter 3 100% finished
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5 gadi atpakaļ |
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Ryan C. Thompson
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16daabbc70
Clean up figure formatting in Chapter 4
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Ryan C. Thompson
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eae7dae7e6
Ignore files marked as processed
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Ryan C. Thompson
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bdc68306a9
Major improvements in figure formatting, and a bit of content
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Ryan C. Thompson
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6663f647e6
Fix wildcard constraints in Snakefile
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Ryan C. Thompson
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2ec14fc88e
Process bib to remove multiple URLs.
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Ryan C. Thompson
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7d0fd50fb0
Remove wrong meanver-trends.pdf
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Ryan C. Thompson
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bcb2b8a187
Consolidate 2 tables
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Ryan C. Thompson
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d7f2f5fa95
Add methylation p-value histogram figure
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Ryan C. Thompson
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01f2726abb
Fix formatting for a bunch of figures
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Ryan C. Thompson
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0d07bd8b35
Minor things
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Ryan C. Thompson
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d5a53bb53b
Move TODO to fix figure formatting
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Ryan C. Thompson
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7fd0420df1
Rasterize some slow-rendering PDF figures.
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Ryan C. Thompson
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0839473102
Convert some figures in Chapter 3 to subfigures as well
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Ryan C. Thompson
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bb2c13b0c5
Convert to sub-figures! And add some more plots
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Ryan C. Thompson
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a3d64f4831
Progress on Chapter 2 results
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Ryan C. Thompson
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96cdef6477
Restructure Chapter 2 according to Andrew's advice
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Ryan C. Thompson
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4fa1453db2
Add a script to check that all input files are tracked in git
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Ryan C. Thompson
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769f1f4b82
Revisions from Friday meeting with Andrew
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Ryan C. Thompson
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7d183c916e
Add Promoter neighborhood plots
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Ryan C. Thompson
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6751fd52c9
Ignore PDF files geneated from SVG
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Ryan C. Thompson
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a32439f4f6
Ignore LyX temp files
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Ryan C. Thompson
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aad24141ca
Use "convert" command instead of "magick" for Ubuntu
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Ryan C. Thompson
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f756c5b852
Add many more figures in chapter 2
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Ryan C. Thompson
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f86d6647b5
Add figures for batch effect confounding section
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Ryan C. Thompson
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52d9524b51
Add a bunch of figures to chapter 2
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Ryan C. Thompson
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dd1295b0ea
Add snakemake rule to autocrop png files
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