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Ryan C. Thompson b4f1d1ad9d Append current CV to thesis 5 years ago
graphics 5ffa57087d Add a figure for promoter logCPM filtering 5 years ago
.gitignore 9994879fae More polishing 5 years ago
README.md 0fd5e43108 Remove latex math formatting from README 5 years ago
ROC-TXvsAR-external-AUC.xlsx 40b0e7f13e Mostly finished all fRMA sections 6 years ago
ROC-TXvsAR-internal-AUC.xlsx 40b0e7f13e Mostly finished all fRMA sections 6 years ago
Snakefile b4f1d1ad9d Append current CV to thesis 5 years ago
abbrevs.tex abfa48ec0d Expand on T-cell memory and costimulation 5 years ago
extra-preamble.latex c983b1fb5e Comment out some obsolete code in extra-preamble.latex 5 years ago
library.bib e850cb95f0 Update bib file 5 years ago
presentation.mkdn 86b946bac0 Tweaks 5 years ago
ryan_thompson_cv.pdf b4f1d1ad9d Append current CV to thesis 5 years ago
slides-notes.org 0f6ff09cfe Finish polishing 5 years ago
thesis.lyx b4f1d1ad9d Append current CV to thesis 5 years ago
update-library.sh 5c8a520770 Add script for pulling latext bib file from Zotero 5 years ago
vcs-check.py 9900311a76 Make vcs-check.py compatible with Python 3.6 5 years ago

README.md

Ryan Thompson's Thesis

Title: Bioinformatic analysis of complex, high-throughput genomic and epigenomic data in the context of CD4+ T-cell differentiation and diagnosis and treatment of transplant rejection

The PDFs are generated from the LyX/LaTeX source and a bunch of supporting files using the Snakemake build tool.