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Thesis
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Ryan C. Thompson 5ffa57087d Add a figure for promoter logCPM filtering 5 gadi atpakaļ
graphics 5ffa57087d Add a figure for promoter logCPM filtering 5 gadi atpakaļ
.gitignore 9994879fae More polishing 5 gadi atpakaļ
README.md 0fd5e43108 Remove latex math formatting from README 5 gadi atpakaļ
ROC-TXvsAR-external-AUC.xlsx 40b0e7f13e Mostly finished all fRMA sections 6 gadi atpakaļ
ROC-TXvsAR-internal-AUC.xlsx 40b0e7f13e Mostly finished all fRMA sections 6 gadi atpakaļ
Snakefile fb1f3bdfea Keep the intermediate presentation.tex around for vcs-check.py 5 gadi atpakaļ
abbrevs.tex abfa48ec0d Expand on T-cell memory and costimulation 5 gadi atpakaļ
code-refs.bib b31f1b0ed7 Fix some references, and improve processing of refs.bib 5 gadi atpakaļ
extra-preamble.latex c983b1fb5e Comment out some obsolete code in extra-preamble.latex 5 gadi atpakaļ
presentation.mkdn 86b946bac0 Tweaks 5 gadi atpakaļ
refs.bib 106cfcabe0 Update refs 5 gadi atpakaļ
slides-notes.org 0f6ff09cfe Finish polishing 5 gadi atpakaļ
thesis.lyx 5ffa57087d Add a figure for promoter logCPM filtering 5 gadi atpakaļ
vcs-check.py 9900311a76 Make vcs-check.py compatible with Python 3.6 5 gadi atpakaļ

README.md

Ryan Thompson's Thesis

Title: Bioinformatic analysis of complex, high-throughput genomic and epigenomic data in the context of CD4+ T-cell differentiation and diagnosis and treatment of transplant rejection

The PDFs are generated from the LyX/LaTeX source and a bunch of supporting files using the Snakemake build tool.