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Ryan C. Thompson b4decb211e Fill out the README a bit		vor 6 Jahren
graphics	86b4af61cc Add a graphic for the experimental design	vor 6 Jahren
.gitignore	9994879fae More polishing	vor 6 Jahren
README.md	b4decb211e Fill out the README a bit	vor 6 Jahren
ROC-TXvsAR-external-AUC.xlsx	40b0e7f13e Mostly finished all fRMA sections	vor 6 Jahren
ROC-TXvsAR-internal-AUC.xlsx	40b0e7f13e Mostly finished all fRMA sections	vor 6 Jahren
Snakefile	fb1f3bdfea Keep the intermediate presentation.tex around for vcs-check.py	vor 6 Jahren
abbrevs.tex	abfa48ec0d Expand on T-cell memory and costimulation	vor 6 Jahren
code-refs.bib	b31f1b0ed7 Fix some references, and improve processing of refs.bib	vor 6 Jahren
extra-preamble.latex	c983b1fb5e Comment out some obsolete code in extra-preamble.latex	vor 6 Jahren
presentation.mkdn	86b946bac0 Tweaks	vor 6 Jahren
refs.bib	106cfcabe0 Update refs	vor 6 Jahren
slides-notes.org	0f6ff09cfe Finish polishing	vor 6 Jahren
thesis.lyx	08ef4bb01d Merge branch 'slides'	vor 6 Jahren
vcs-check.py	9900311a76 Make vcs-check.py compatible with Python 3.6	vor 6 Jahren

Ryan Thompson's Thesis

Title: Bioinformatic analysis of complex, high-throughput genomic and epigenomic data in the context of $\textrm[CD4]^{+}$ T-cell differentiation and diagnosis and treatment of transplant rejection

Final thesis document: https://mneme.dedyn.io/~ryan/Thesis/thesis-final.pdf
Defense slides: https://mneme.dedyn.io/~ryan/Thesis/presentation.pdf

The PDFs are generated from the LyX/LaTeX source and a bunch of supporting files using the Snakemake build tool.

README.md

Ryan Thompson's Thesis