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Ryan C. Thompson 597cedad12 Resolve some TODO items		5 jaren geleden
graphics	86b4af61cc Add a graphic for the experimental design	5 jaren geleden
.gitignore	9994879fae More polishing	5 jaren geleden
README.md	0fd5e43108 Remove latex math formatting from README	5 jaren geleden
ROC-TXvsAR-external-AUC.xlsx	40b0e7f13e Mostly finished all fRMA sections	6 jaren geleden
ROC-TXvsAR-internal-AUC.xlsx	40b0e7f13e Mostly finished all fRMA sections	6 jaren geleden
Snakefile	fb1f3bdfea Keep the intermediate presentation.tex around for vcs-check.py	5 jaren geleden
abbrevs.tex	abfa48ec0d Expand on T-cell memory and costimulation	5 jaren geleden
code-refs.bib	b31f1b0ed7 Fix some references, and improve processing of refs.bib	5 jaren geleden
extra-preamble.latex	c983b1fb5e Comment out some obsolete code in extra-preamble.latex	5 jaren geleden
presentation.mkdn	86b946bac0 Tweaks	5 jaren geleden
refs.bib	106cfcabe0 Update refs	5 jaren geleden
slides-notes.org	0f6ff09cfe Finish polishing	5 jaren geleden
thesis.lyx	597cedad12 Resolve some TODO items	5 jaren geleden
vcs-check.py	9900311a76 Make vcs-check.py compatible with Python 3.6	5 jaren geleden

Ryan Thompson's Thesis

Title: Bioinformatic analysis of complex, high-throughput genomic and epigenomic data in the context of CD4+ T-cell differentiation and diagnosis and treatment of transplant rejection

Final thesis document: https://mneme.dedyn.io/~ryan/Thesis/thesis-final.pdf
Defense slides: https://mneme.dedyn.io/~ryan/Thesis/presentation.pdf

The PDFs are generated from the LyX/LaTeX source and a bunch of supporting files using the Snakemake build tool.

README.md

Ryan Thompson's Thesis