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@@ -4953,36 +4953,6 @@ voomWithQualityWeights
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ChIP-seq analyses
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\end_layout
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-\begin_layout Standard
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-\begin_inset Flex TODO Note (inline)
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-status open
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-
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-\begin_layout Plain Layout
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-Be consistent about use of
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-\begin_inset Quotes eld
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-\end_inset
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-
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-differential binding
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-\begin_inset Quotes erd
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-\end_inset
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-
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- vs
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-\begin_inset Quotes eld
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-\end_inset
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-
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-differential modification
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-\begin_inset Quotes erd
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-\end_inset
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-
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- throughout this chapter.
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- The latter is usually preferred.
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-\end_layout
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-
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-\end_inset
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-
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-
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-\end_layout
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-
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\begin_layout Standard
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Sequence reads were retrieved from
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\begin_inset Flex Glossary Term
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@@ -5208,7 +5178,7 @@ begin{landscape}
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\begin_inset Float figure
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wide false
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sideways false
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-status open
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+status collapsed
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\begin_layout Plain Layout
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\align center
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@@ -7115,7 +7085,7 @@ H3K4 and H3K27 methylation occur in broad regions and are enriched near
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\begin_inset Float table
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wide false
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sideways false
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-status open
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+status collapsed
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\begin_layout Plain Layout
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\align center
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@@ -12115,36 +12085,6 @@ Reintroduce all abbreviations
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Introduction
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\end_layout
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-\begin_layout Standard
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-\begin_inset Note Note
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-status open
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-
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-\begin_layout Plain Layout
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-\begin_inset Flex TODO Note (inline)
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-status open
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-
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-\begin_layout Plain Layout
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-Fill this out, maybe
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-\end_layout
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-
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-\end_inset
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-
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-
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-\end_layout
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-
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-\begin_layout Subsection
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-Arrays for diagnostics
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-\end_layout
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-
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-\begin_layout Plain Layout
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-Arrays are an attractive platform for diagnostics
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-\end_layout
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-
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-\end_inset
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-
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-
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-\end_layout
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-
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\begin_layout Subsection
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Proper pre-processing is essential for array data
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\end_layout
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