Resolve some TODO items

thesis.lyx

@@ -4953,36 +4953,6 @@ voomWithQualityWeights
 ChIP-seq analyses
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-Be consistent about use of 
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-differential binding
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- vs 
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-differential modification
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- throughout this chapter.
- The latter is usually preferred.
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 Sequence reads were retrieved from 
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@@ -5208,7 +5178,7 @@ begin{landscape}
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@@ -7115,7 +7085,7 @@ H3K4 and H3K27 methylation occur in broad regions and are enriched near
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@@ -12115,36 +12085,6 @@ Reintroduce all abbreviations
 Introduction
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-Fill this out, maybe
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-\begin_layout Subsection
-Arrays for diagnostics
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-Arrays are an attractive platform for diagnostics
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 \begin_layout Subsection
 Proper pre-processing is essential for array data
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