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Ryan C. Thompson e09d714128 Fix up some references		vor 5 Jahren
graphics	5ffa57087d Add a figure for promoter logCPM filtering	vor 5 Jahren
.gitignore	9994879fae More polishing	vor 5 Jahren
README.md	0fd5e43108 Remove latex math formatting from README	vor 5 Jahren
ROC-TXvsAR-external-AUC.xlsx	40b0e7f13e Mostly finished all fRMA sections	vor 6 Jahren
ROC-TXvsAR-internal-AUC.xlsx	40b0e7f13e Mostly finished all fRMA sections	vor 6 Jahren
Snakefile	63e92ccfb4 Don't include PMID in references	vor 5 Jahren
abbrevs.tex	abfa48ec0d Expand on T-cell memory and costimulation	vor 5 Jahren
extra-preamble.latex	c983b1fb5e Comment out some obsolete code in extra-preamble.latex	vor 5 Jahren
library.bib	e09d714128 Fix up some references	vor 5 Jahren
presentation.mkdn	86b946bac0 Tweaks	vor 5 Jahren
slides-notes.org	0f6ff09cfe Finish polishing	vor 5 Jahren
thesis.lyx	e09d714128 Fix up some references	vor 5 Jahren
update-library.sh	5c8a520770 Add script for pulling latext bib file from Zotero	vor 5 Jahren
vcs-check.py	9900311a76 Make vcs-check.py compatible with Python 3.6	vor 5 Jahren

Ryan Thompson's Thesis

Title: Bioinformatic analysis of complex, high-throughput genomic and epigenomic data in the context of CD4+ T-cell differentiation and diagnosis and treatment of transplant rejection

Final thesis document: https://mneme.dedyn.io/~ryan/Thesis/thesis-final.pdf
Defense slides: https://mneme.dedyn.io/~ryan/Thesis/presentation.pdf

The PDFs are generated from the LyX/LaTeX source and a bunch of supporting files using the Snakemake build tool.

README.md

Ryan Thompson's Thesis