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Thesis
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Ryan C. Thompson 63e92ccfb4 Don't include PMID in references il y a 5 ans
graphics 5ffa57087d Add a figure for promoter logCPM filtering il y a 5 ans
.gitignore 9994879fae More polishing il y a 5 ans
README.md 0fd5e43108 Remove latex math formatting from README il y a 5 ans
ROC-TXvsAR-external-AUC.xlsx 40b0e7f13e Mostly finished all fRMA sections il y a 6 ans
ROC-TXvsAR-internal-AUC.xlsx 40b0e7f13e Mostly finished all fRMA sections il y a 6 ans
Snakefile 63e92ccfb4 Don't include PMID in references il y a 5 ans
abbrevs.tex abfa48ec0d Expand on T-cell memory and costimulation il y a 5 ans
extra-preamble.latex c983b1fb5e Comment out some obsolete code in extra-preamble.latex il y a 5 ans
library.bib 48755c4404 Switch to Zotero as bib file provider il y a 5 ans
presentation.mkdn 86b946bac0 Tweaks il y a 5 ans
slides-notes.org 0f6ff09cfe Finish polishing il y a 5 ans
thesis.lyx f7745624b4 Re-enable bib file preprocessing il y a 5 ans
update-library.sh 5c8a520770 Add script for pulling latext bib file from Zotero il y a 5 ans
vcs-check.py 9900311a76 Make vcs-check.py compatible with Python 3.6 il y a 5 ans

README.md

Ryan Thompson's Thesis

Title: Bioinformatic analysis of complex, high-throughput genomic and epigenomic data in the context of CD4+ T-cell differentiation and diagnosis and treatment of transplant rejection

The PDFs are generated from the LyX/LaTeX source and a bunch of supporting files using the Snakemake build tool.