Add some notes for print formatting

Snakefile

@@ -258,7 +258,6 @@ checkpoint lyx_add_final:
                 lyx_text = regex.sub('\\\\use_default_options true', '\\\\options final\n\\\\use_default_options true', lyx_text)
             outfile.write(lyx_text)
 
-# TODO: Remove all URLs from entries with a DOI
 rule process_bib:
     '''Preprocess bib file for LaTeX.
 

thesis.lyx

@@ -852,7 +852,7 @@ asticity inherent in the data.
 
 \begin_layout Standard
 \begin_inset Note Note
-status collapsed
+status open
 
 \begin_layout Chapter*
 Notes to draft readers
@@ -23625,6 +23625,45 @@ options "bibtotoc"
 \end_inset
 
 
+\end_layout
+
+\begin_layout Standard
+\begin_inset Note Note
+status open
+
+\begin_layout Plain Layout
+How to include other PDFs: https://tex.stackexchange.com/a/28323/5654
+\end_layout
+
+\end_inset
+
+
+\end_layout
+
+\begin_layout Standard
+\begin_inset Flex TODO Note (inline)
+status open
+
+\begin_layout Plain Layout
+Appendix: Publications?
+\end_layout
+
+\end_inset
+
+
+\end_layout
+
+\begin_layout Standard
+\begin_inset Flex TODO Note (inline)
+status open
+
+\begin_layout Plain Layout
+Curriculum vitae
+\end_layout
+
+\end_inset
+
+
 \end_layout
 
 \end_body