Misc formatting tweaks

thesis.lyx

@@ -364,6 +364,19 @@ Use roman numeral page numbers
 \end_inset
 
 
+\end_layout
+
+\begin_layout Standard
+\begin_inset Note Note
+status open
+
+\begin_layout Plain Layout
+Copyright notice page
+\end_layout
+
+\end_inset
+
+
 \end_layout
 
 \begin_layout Standard
@@ -441,17 +454,29 @@ stretch{2}}
 
 \begin_layout Standard
 \align center
+\begin_inset Newpage newpage
+\end_inset
+
+
+\end_layout
+
+\begin_layout Standard
 \begin_inset Note Note
 status open
 
 \begin_layout Plain Layout
-\begin_inset Newpage newpage
+\align center
+Thesis acceptance form page.
+ (Left intentionally blank, Grad Office will insert the real acceptance
+ form.)
+\end_layout
+
 \end_inset
 
 
 \end_layout
 
-\begin_layout Plain Layout
+\begin_layout Standard
 \align center
 \begin_inset ERT
 status collapsed
@@ -475,18 +500,22 @@ addcontentsline{toc}{chapter}{Thesis acceptance form}
 
 \end_layout
 
-\begin_layout Plain Layout
-\align center
-[Thesis acceptance form]
-\end_layout
-
+\begin_layout Standard
+\begin_inset Newpage newpage
 \end_inset
 
 
 \end_layout
 
 \begin_layout Standard
-\begin_inset Newpage newpage
+\align center
+\begin_inset Note Note
+status open
+
+\begin_layout Plain Layout
+Dedication page
+\end_layout
+
 \end_inset
 
 
@@ -541,7 +570,7 @@ For Dan, who helped me through the hard times again and again.
 \begin_inset Newline newline
 \end_inset
 
-He is, and will always be, fondly remembered and sorely missed.
+He is fondly remembered and sorely missed.
 \end_layout
 
 \begin_layout Standard
@@ -656,6 +685,32 @@ Finally, I wish to thank my parents, for instilling in me a love of science
 \end_inset
 
 
+\end_layout
+
+\begin_layout Standard
+\begin_inset ERT
+status open
+
+\begin_layout Plain Layout
+
+%
+\backslash
+begin{singlespace}
+\end_layout
+
+\end_inset
+
+
+\begin_inset Note Note
+status open
+
+\begin_layout Plain Layout
+Could make the TOC single spaced if I wanted
+\end_layout
+
+\end_inset
+
+
 \end_layout
 
 \begin_layout Standard
@@ -728,7 +783,7 @@ literal "false"
 
 \begin_layout Standard
 \begin_inset ERT
-status collapsed
+status open
 
 \begin_layout Plain Layout
 
@@ -741,6 +796,13 @@ glossaryname}{List of Abbreviations}%
 
 \begin_layout Plain Layout
 
+%
+\backslash
+setglossarystyle{index}
+\end_layout
+
+\begin_layout Plain Layout
+
 
 \backslash
 printglossaries
@@ -753,6 +815,22 @@ printglossaries
 
 \begin_layout List of TODOs
 
+\end_layout
+
+\begin_layout Standard
+\begin_inset ERT
+status open
+
+\begin_layout Plain Layout
+
+%
+\backslash
+end{singlespace}
+\end_layout
+
+\end_inset
+
+
 \end_layout
 
 \begin_layout Chapter*
@@ -852,7 +930,7 @@ asticity inherent in the data.
 
 \begin_layout Standard
 \begin_inset Note Note
-status open
+status collapsed
 
 \begin_layout Chapter*
 Notes to draft readers
@@ -4219,14 +4297,24 @@ status open
 \begin_inset Caption Standard
 
 \begin_layout Plain Layout
+\begin_inset Argument 1
+status open
+
+\begin_layout Plain Layout
+Overview of the experimental design.
+\end_layout
+
+\end_inset
+
 
-\series bold
 \begin_inset CommandInset label
 LatexCommand label
 name "fig:Experimental-design"
 
 \end_inset
 
+
+\series bold
 Overview of the experimental design.
 \end_layout
 
@@ -4624,7 +4712,7 @@ zig-zag
 \begin_inset Float figure
 wide false
 sideways false
-status collapsed
+status open
 
 \begin_layout Plain Layout
 \align center