|
|
@@ -7625,8 +7625,7 @@ status open
|
|
|
status open
|
|
|
|
|
|
\begin_layout Plain Layout
|
|
|
-Consider transposing this table and the next one, and maybe grouping them
|
|
|
- together as sub-tables.
|
|
|
+Consider transposing these tables
|
|
|
\end_layout
|
|
|
|
|
|
\end_inset
|
|
|
@@ -7634,6 +7633,12 @@ Consider transposing this table and the next one, and maybe grouping them
|
|
|
|
|
|
\end_layout
|
|
|
|
|
|
+\begin_layout Plain Layout
|
|
|
+\begin_inset Float table
|
|
|
+wide false
|
|
|
+sideways false
|
|
|
+status collapsed
|
|
|
+
|
|
|
\begin_layout Plain Layout
|
|
|
\align center
|
|
|
\begin_inset Tabular
|
|
|
@@ -7850,24 +7855,7 @@ name "tab:methyl-num-signif"
|
|
|
|
|
|
\end_inset
|
|
|
|
|
|
-
|
|
|
-\series bold
|
|
|
-Number of probes significant at 10% FDR for each contrast in each analysis.
|
|
|
-
|
|
|
-\series default
|
|
|
-For each of the analyses in Table
|
|
|
-\begin_inset CommandInset ref
|
|
|
-LatexCommand ref
|
|
|
-reference "tab:Summary-of-meth-analysis"
|
|
|
-plural "false"
|
|
|
-caps "false"
|
|
|
-noprefix "false"
|
|
|
-
|
|
|
-\end_inset
|
|
|
-
|
|
|
-, the table shows the number of probes called significantly differentially
|
|
|
- methylated at a threshold of 10% FDR for each comparison between TX and
|
|
|
- the other 3 transplant statuses.
|
|
|
+Number of probes significant at 10% FDR.
|
|
|
\end_layout
|
|
|
|
|
|
\end_inset
|
|
|
@@ -7878,13 +7866,14 @@ noprefix "false"
|
|
|
\end_inset
|
|
|
|
|
|
|
|
|
-\end_layout
|
|
|
+\begin_inset space \hfill{}
|
|
|
+\end_inset
|
|
|
+
|
|
|
|
|
|
-\begin_layout Standard
|
|
|
\begin_inset Float table
|
|
|
wide false
|
|
|
sideways false
|
|
|
-status open
|
|
|
+status collapsed
|
|
|
|
|
|
\begin_layout Plain Layout
|
|
|
\align center
|
|
|
@@ -8102,9 +8091,35 @@ name "tab:methyl-est-nonnull"
|
|
|
|
|
|
\end_inset
|
|
|
|
|
|
+Estimated number of non-null tests, using the method of
|
|
|
+\begin_inset CommandInset citation
|
|
|
+LatexCommand cite
|
|
|
+key "Phipson2013"
|
|
|
+literal "false"
|
|
|
+
|
|
|
+\end_inset
|
|
|
+
|
|
|
+.
|
|
|
+\end_layout
|
|
|
+
|
|
|
+\end_inset
|
|
|
+
|
|
|
+
|
|
|
+\end_layout
|
|
|
+
|
|
|
+\end_inset
|
|
|
+
|
|
|
+
|
|
|
+\end_layout
|
|
|
+
|
|
|
+\begin_layout Plain Layout
|
|
|
+\begin_inset Caption Standard
|
|
|
+
|
|
|
+\begin_layout Plain Layout
|
|
|
|
|
|
\series bold
|
|
|
-Estimated number of non-null tests for each contrast in each analysis.
|
|
|
+Estimates of degree of differential methylation in for each contrast in
|
|
|
+ each analysis.
|
|
|
|
|
|
\series default
|
|
|
For each of the analyses in Table
|
|
|
@@ -8117,16 +8132,30 @@ noprefix "false"
|
|
|
|
|
|
\end_inset
|
|
|
|
|
|
-, the table shows the number of probes estimated to be differentially methylated
|
|
|
- between TX and the other 3 transplant statuses using the method of
|
|
|
-\begin_inset CommandInset citation
|
|
|
-LatexCommand cite
|
|
|
-key "Phipson2013"
|
|
|
-literal "false"
|
|
|
+, these tables show the number of probes called significantly differentially
|
|
|
+ methylated at a threshold of 10% FDR for each comparison between TX and
|
|
|
+ the other 3 transplant statuses (
|
|
|
+\begin_inset CommandInset ref
|
|
|
+LatexCommand ref
|
|
|
+reference "tab:methyl-num-signif"
|
|
|
+plural "false"
|
|
|
+caps "false"
|
|
|
+noprefix "false"
|
|
|
|
|
|
\end_inset
|
|
|
|
|
|
-.
|
|
|
+) and the estimated total number of probes that are differentially methylated
|
|
|
+ (
|
|
|
+\begin_inset CommandInset ref
|
|
|
+LatexCommand ref
|
|
|
+reference "tab:methyl-est-nonnull"
|
|
|
+plural "false"
|
|
|
+caps "false"
|
|
|
+noprefix "false"
|
|
|
+
|
|
|
+\end_inset
|
|
|
+
|
|
|
+).
|
|
|
\end_layout
|
|
|
|
|
|
\end_inset
|
