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@@ -221,22 +221,21 @@ LatexCommand tableofcontents
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[List of Abbreviations]
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[List of Abbreviations]
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\end_layout
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\end_layout
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+\begin_layout List of TODOs
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+
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+\end_layout
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+
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\begin_layout Standard
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\begin_layout Standard
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\begin_inset Flex TODO Note (inline)
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\begin_inset Flex TODO Note (inline)
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status open
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status open
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\begin_layout Plain Layout
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\begin_layout Plain Layout
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-Look into auto-generated nomenclature list: https://wiki.lyx.org/Tips/Nomenclature.
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- Otherwise, do a manual pass for all abbreviations.
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+Check all figures to make sure they fit on the page with their legends.
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\end_layout
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\end_layout
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\end_inset
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\end_inset
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-\end_layout
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-
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-\begin_layout List of TODOs
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-
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\end_layout
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\end_layout
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\begin_layout Standard
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\begin_layout Standard
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@@ -244,8 +243,7 @@ Look into auto-generated nomenclature list: https://wiki.lyx.org/Tips/Nomenclatu
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status open
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status open
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\begin_layout Plain Layout
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\begin_layout Plain Layout
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-On final pass: Check all figures to make sure they fit on the page with
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- their legends.
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+Search and replace: naive -> naïve
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\end_layout
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\end_layout
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\end_inset
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\end_inset
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@@ -258,7 +256,9 @@ On final pass: Check all figures to make sure they fit on the page with
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status open
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status open
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\begin_layout Plain Layout
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\begin_layout Plain Layout
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-Search and replace: naive -> naïve
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+Look into auto-generated nomenclature list: https://wiki.lyx.org/Tips/Nomenclature.
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+ Otherwise, do a manual pass for all abbreviations.
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+ Do nomenclature/abbreviations independently for each chapter.
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\end_layout
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\end_layout
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\end_inset
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\end_inset
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@@ -271,8 +271,7 @@ Search and replace: naive -> naïve
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status open
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status open
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\begin_layout Plain Layout
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\begin_layout Plain Layout
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-Once all 3 content chapters are written, go back over them and make them
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- consistent in terms of
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+Make all descriptions consistent in terms of
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\begin_inset Quotes eld
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\begin_inset Quotes eld
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\end_inset
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\end_inset
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@@ -767,30 +766,6 @@ literal "false"
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RNA-seq align+quant method comparison
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RNA-seq align+quant method comparison
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\end_layout
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\end_layout
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-\begin_layout Standard
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-\align left
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-\begin_inset Flex TODO Note (inline)
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-status open
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-
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-\begin_layout Plain Layout
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-Write a legend for Figure
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-\begin_inset CommandInset ref
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-LatexCommand ref
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-reference "fig:RNA-norm-comp"
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-plural "false"
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-caps "false"
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-noprefix "false"
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-
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-\end_inset
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-
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-
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-\end_layout
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-
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-\end_inset
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-
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-
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-\end_layout
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-
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\begin_layout Standard
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\begin_layout Standard
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\begin_inset Float figure
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\begin_inset Float figure
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wide false
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wide false
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