Startseite Erkunden Hilfe
Registrieren Anmelden
ryan
/
resume
Mirror von https://github.com/DarwinAwardWinner/resume.git
1
0
Fork 0
Dateien Wiki
Struktur: 90ddb01b0a
Branches Tags
resume
/
examples
/
Salomon
/
CD4
/
reports
/
RNA-seq
Ryan C. Thompson 90ddb01b0a Generate all index.html files vor 8 Jahren
..
README.mkdn 1028227eaa Add a README.mkdn for every directory vor 8 Jahren
hisat2_grch38_snp_tran_ensembl.85-diffexp.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
hisat2_grch38_snp_tran_ensembl.85-exploration.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
hisat2_grch38_snp_tran_knownGene-diffexp.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
hisat2_grch38_snp_tran_knownGene-exploration.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
index.html 90ddb01b0a Generate all index.html files vor 8 Jahren
kallisto_hg38.analysisSet_ensembl.85-diffexp.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
kallisto_hg38.analysisSet_ensembl.85-exploration.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
kallisto_hg38.analysisSet_knownGene-diffexp.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
kallisto_hg38.analysisSet_knownGene-exploration.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
rnaseq-compare.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
salmon_hg38.analysisSet_ensembl.85-diffexp.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
salmon_hg38.analysisSet_ensembl.85-exploration.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
salmon_hg38.analysisSet_knownGene-diffexp.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
salmon_hg38.analysisSet_knownGene-exploration.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
shoal_hg38.analysisSet_ensembl.85-diffexp.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
shoal_hg38.analysisSet_ensembl.85-exploration.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
shoal_hg38.analysisSet_knownGene-diffexp.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
shoal_hg38.analysisSet_knownGene-exploration.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
star_hg38.analysisSet_ensembl.85-diffexp.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
star_hg38.analysisSet_ensembl.85-exploration.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
star_hg38.analysisSet_knownGene-diffexp.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren
star_hg38.analysisSet_knownGene-exploration.html ede1d34b13 Add new reports and plots for CD4-csaw project vor 8 Jahren

README.mkdn

RNA-seq data were analyzed using 5 different quantification strategies
and 2 different transcriptome annotations, for 10 total analyses.

## Data exploration and QC reports

- [`hisat2_grch38_snp_tran_ensembl.85-exploration.html`](hisat2_grch38_snp_tran_ensembl.85-exploration.html)
- [`hisat2_grch38_snp_tran_knownGene-exploration.html`](hisat2_grch38_snp_tran_knownGene-exploration.html)
- [`kallisto_hg38.analysisSet_ensembl.85-exploration.html`](kallisto_hg38.analysisSet_ensembl.85-exploration.html)
- [`kallisto_hg38.analysisSet_knownGene-exploration.html`](kallisto_hg38.analysisSet_knownGene-exploration.html)
- [`salmon_hg38.analysisSet_ensembl.85-exploration.html`](salmon_hg38.analysisSet_ensembl.85-exploration.html)
- [`salmon_hg38.analysisSet_knownGene-exploration.html`](salmon_hg38.analysisSet_knownGene-exploration.html)
- [`shoal_hg38.analysisSet_ensembl.85-exploration.html`](shoal_hg38.analysisSet_ensembl.85-exploration.html)
- [`shoal_hg38.analysisSet_knownGene-exploration.html`](shoal_hg38.analysisSet_knownGene-exploration.html)
- [`star_hg38.analysisSet_ensembl.85-exploration.html`](star_hg38.analysisSet_ensembl.85-exploration.html)
- [`star_hg38.analysisSet_knownGene-exploration.html`](star_hg38.analysisSet_knownGene-exploration.html)

## Differential expression reports

- [`hisat2_grch38_snp_tran_ensembl.85-diffexp.html`](hisat2_grch38_snp_tran_ensembl.85-diffexp.html)
- [`hisat2_grch38_snp_tran_knownGene-diffexp.html`](hisat2_grch38_snp_tran_knownGene-diffexp.html)
- [`kallisto_hg38.analysisSet_ensembl.85-diffexp.html`](kallisto_hg38.analysisSet_ensembl.85-diffexp.html)
- [`kallisto_hg38.analysisSet_knownGene-diffexp.html`](kallisto_hg38.analysisSet_knownGene-diffexp.html)
- [`salmon_hg38.analysisSet_ensembl.85-diffexp.html`](salmon_hg38.analysisSet_ensembl.85-diffexp.html)
- [`salmon_hg38.analysisSet_knownGene-diffexp.html`](salmon_hg38.analysisSet_knownGene-diffexp.html)
- [`shoal_hg38.analysisSet_ensembl.85-diffexp.html`](shoal_hg38.analysisSet_ensembl.85-diffexp.html)
- [`shoal_hg38.analysisSet_knownGene-diffexp.html`](shoal_hg38.analysisSet_knownGene-diffexp.html)
- [`star_hg38.analysisSet_ensembl.85-diffexp.html`](star_hg38.analysisSet_ensembl.85-diffexp.html)
- [`star_hg38.analysisSet_knownGene-diffexp.html`](star_hg38.analysisSet_knownGene-diffexp.html)

## Comparison between quantification strategies

- [`rnaseq-compare.html`](rnaseq-compare.html)