resume/examples/Salomon/CD4/reports/RNA-seq/index.html

<p>RNA-seq data were analyzed using 5 different quantification strategies and 2 different transcriptome annotations, for 10 total analyses.</p>
<h2 id="data-exploration-and-qc-reports">Data exploration and QC reports</h2>
<ul>
<li><a href="hisat2_grch38_snp_tran_ensembl.85-exploration.html"><code>hisat2_grch38_snp_tran_ensembl.85-exploration.html</code></a></li>
<li><a href="hisat2_grch38_snp_tran_knownGene-exploration.html"><code>hisat2_grch38_snp_tran_knownGene-exploration.html</code></a></li>
<li><a href="kallisto_hg38.analysisSet_ensembl.85-exploration.html"><code>kallisto_hg38.analysisSet_ensembl.85-exploration.html</code></a></li>
<li><a href="kallisto_hg38.analysisSet_knownGene-exploration.html"><code>kallisto_hg38.analysisSet_knownGene-exploration.html</code></a></li>
<li><a href="salmon_hg38.analysisSet_ensembl.85-exploration.html"><code>salmon_hg38.analysisSet_ensembl.85-exploration.html</code></a></li>
<li><a href="salmon_hg38.analysisSet_knownGene-exploration.html"><code>salmon_hg38.analysisSet_knownGene-exploration.html</code></a></li>
<li><a href="shoal_hg38.analysisSet_ensembl.85-exploration.html"><code>shoal_hg38.analysisSet_ensembl.85-exploration.html</code></a></li>
<li><a href="shoal_hg38.analysisSet_knownGene-exploration.html"><code>shoal_hg38.analysisSet_knownGene-exploration.html</code></a></li>
<li><a href="star_hg38.analysisSet_ensembl.85-exploration.html"><code>star_hg38.analysisSet_ensembl.85-exploration.html</code></a></li>
<li><a href="star_hg38.analysisSet_knownGene-exploration.html"><code>star_hg38.analysisSet_knownGene-exploration.html</code></a></li>
</ul>
<h2 id="differential-expression-reports">Differential expression reports</h2>
<ul>
<li><a href="hisat2_grch38_snp_tran_ensembl.85-diffexp.html"><code>hisat2_grch38_snp_tran_ensembl.85-diffexp.html</code></a></li>
<li><a href="hisat2_grch38_snp_tran_knownGene-diffexp.html"><code>hisat2_grch38_snp_tran_knownGene-diffexp.html</code></a></li>
<li><a href="kallisto_hg38.analysisSet_ensembl.85-diffexp.html"><code>kallisto_hg38.analysisSet_ensembl.85-diffexp.html</code></a></li>
<li><a href="kallisto_hg38.analysisSet_knownGene-diffexp.html"><code>kallisto_hg38.analysisSet_knownGene-diffexp.html</code></a></li>
<li><a href="salmon_hg38.analysisSet_ensembl.85-diffexp.html"><code>salmon_hg38.analysisSet_ensembl.85-diffexp.html</code></a></li>
<li><a href="salmon_hg38.analysisSet_knownGene-diffexp.html"><code>salmon_hg38.analysisSet_knownGene-diffexp.html</code></a></li>
<li><a href="shoal_hg38.analysisSet_ensembl.85-diffexp.html"><code>shoal_hg38.analysisSet_ensembl.85-diffexp.html</code></a></li>
<li><a href="shoal_hg38.analysisSet_knownGene-diffexp.html"><code>shoal_hg38.analysisSet_knownGene-diffexp.html</code></a></li>
<li><a href="star_hg38.analysisSet_ensembl.85-diffexp.html"><code>star_hg38.analysisSet_ensembl.85-diffexp.html</code></a></li>
<li><a href="star_hg38.analysisSet_knownGene-diffexp.html"><code>star_hg38.analysisSet_knownGene-diffexp.html</code></a></li>
</ul>
<h2 id="comparison-between-quantification-strategies">Comparison between quantification strategies</h2>
<ul>
<li><a href="rnaseq-compare.html"><code>rnaseq-compare.html</code></a></li>
</ul>