Ryan C. Thompson
ae7dbc6436
Avoid using Google Chart API
|
8 years ago | |
|---|---|---|
| .. | ||
| README.mkdn | 8 years ago | |
| delox.R | 8 years ago | |
| delox.R.html | 8 years ago | |
| depth-consistency.pdf | 9 years ago | |
| illumina-qc.html | 8 years ago | |
| illumina-qc.png | 8 years ago | |
| index.html | 8 years ago | |
| ipi-results-small.txt | 9 years ago | |
| mirna-results.html | 9 years ago | |
| neartarget.pdf | 9 years ago | |
| on-off-coverage.pdf | 9 years ago | |
README.mkdn
- [`delox.R.html`](delox.R.html): The R code
for
[Deloxer](https://academic.oup.com/nar/article/40/3/e24/1128321/Illumina-mate-paired-DNA-sequencing-library)
- [`depth-consistency.pdf`](depth-consistency.pdf): Visualization of
consistency of coverage depth between 2 Exome sequencing replicates
- [`illumina-qc.html`](illumina-qc.png): QC chart indicating quality
score dropoff along read length for exome sequencing data set.
- [`ipi-results-small.txt`](ipi-results-small.txt): A sample of output
showing alignment of *de novo* assembled black rhino and white rhino
transcript sequences to human proteins. This was used to find
differences between the two rhino species in otherwise conserved
regions.
- [`mirna-results.html`](mirna-results.html): Example output from
miRNA binding site predictions
- [`neartarget.pdf`](neartarget.pdf): Visualization of mean coverage
depth in exome sequencing data in the regions flanking the probe
targets.
- [`on-off-coverage.pdf`](on-off-coverage.pdf): Relationship between
covered on-target bases and covered off-target bases in exome-seq
data, with varying extensions of the target region to allow for
"near-target" capture.
for
[Deloxer](https://academic.oup.com/nar/article/40/3/e24/1128321/Illumina-mate-paired-DNA-sequencing-library)
- [`depth-consistency.pdf`](depth-consistency.pdf): Visualization of
consistency of coverage depth between 2 Exome sequencing replicates
- [`illumina-qc.html`](illumina-qc.png): QC chart indicating quality
score dropoff along read length for exome sequencing data set.
- [`ipi-results-small.txt`](ipi-results-small.txt): A sample of output
showing alignment of *de novo* assembled black rhino and white rhino
transcript sequences to human proteins. This was used to find
differences between the two rhino species in otherwise conserved
regions.
- [`mirna-results.html`](mirna-results.html): Example output from
miRNA binding site predictions
- [`neartarget.pdf`](neartarget.pdf): Visualization of mean coverage
depth in exome sequencing data in the regions flanking the probe
targets.
- [`on-off-coverage.pdf`](on-off-coverage.pdf): Relationship between
covered on-target bases and covered off-target bases in exome-seq
data, with varying extensions of the target region to allow for
"near-target" capture.