resume/citations.bib

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@unpublished{mathpaper,
	Abstract = {Of all the systems of thinking that have made their way through the ages, Euclidean geometry remains one of the most appealing and intuitive. It is also one of the most successful, having been practiced continuously from Greek antiquity through modern-day schools. We will examine the aspects of geometry that account for this intuitiveness, as well as several innovations that allowed it to tackle new and more difficult problems. We begin with an analysis of Euclid's Elements, and then we will consider the contributions of two ancient authors, Archimedes and Apollonius. Lastly, we will see how two authors during the scientific revolution, Galileo Galilei and Ren{\'e} Descartes, pushed geometry into new areas, namely the realistic and the algebraic.},
	Author = {\textbf{Ryan C. Thompson}},
	Date-Added = {2015-08-26 05:17:44 +0000},
	Date-Modified = {2015-09-09 18:11:19 +0000},
	Month = {May},
	Title = {\href{http://mneme.homenet.org/~ryan/resume/examples/UVa/math-history-paper.pdf}{The Sources and Limits of Geometric Rigor from {Euclid} Through {Descartes}}},
	Year = {2008},
	Bdsk-Url-1 = {https://mneme.homenet.org/~ryan/resume/examples/UVa/math-history-paper.pdf}}

@unpublished{cfarmer,
	Abstract = {Here we present Contig Farmer, a tool for improving the length and depth of coverage of contigs generated from a database of short sequence reads. Contig Farmer works without assembling the entire database and has only modest hardware requirements. The underlying methodology of Contig Farmer is itera- tive growth of seed contigs using repeated search and assembly. The utility of Contig Farmer is demon- strated on the sequences in TOBFAC, the database of tobacco transcription factors. Contig Farmer suc- cessfully grew the TOBFAC contigs, both in length and in depth of coverage, to yield a larger, higher- quality set of contigs.},
	Author = {\textbf{Ryan C. Thompson} and Paul J. Rushton and Tom W. Laudeman and Michael P. Timko},
	Date-Added = {2015-08-26 05:11:30 +0000},
	Date-Modified = {2015-09-09 18:11:14 +0000},
	Month = {June},
	School = {University of Virginia},
	Title = {\href{http://mneme.homenet.org/~ryan/resume/examples/UVa/contigfarmer.pdf}{{Contig} {Farmer}: A Tool for Extracting Maximal-Length Contiguous Sequences from a Database of Short Sequence Reads (Undergraduate Thesis)}},
	Year = {2009},
	Bdsk-Url-1 = {https://mneme.homenet.org/~ryan/resume/examples/UVa/contigfarmer.pdf}}

@article{kurian2014molecular,
	Author = {Kurian, SM and Williams, AN and Gelbart, T and Campbell, D and Mondala, TS and Head, SR and Horvath, S and Gaber, L and \textbf{R Thompson} and Whisenant, T and others},
	Date-Modified = {2015-08-26 05:52:31 +0000},
	Journal = {American Journal of Transplantation},
	Number = {5},
	Pages = {1164--1172},
	Publisher = {Wiley Online Library},
	Title = {Molecular Classifiers for Acute Kidney Transplant Rejection in Peripheral Blood by Whole Genome Gene Expression Profiling},
	Volume = {14},
	Year = {2014},
	Bdsk-Url-1 = {http://onlinelibrary.wiley.com/enhanced/doi/10.1111/ajt.12671/}}

@article{van2011illumina,
	Author = {Van Nieuwerburgh, Filip and \textbf{Ryan C. Thompson} and Ledesma, Jessica and Deforce, Dieter and Gaasterland, Terry and Ordoukhanian, Phillip and Head, Steven R},
	Date-Modified = {2015-08-26 06:03:08 +0000},
	Journal = {Nucleic Acids Research},
	Pages = {gkr1000},
	Publisher = {Oxford Univ Press},
	Title = {{Illumina} Mate-Paired DNA Sequencing Library Preparation Using Cre-Lox Recombination},
	Year = {2011},
	Bdsk-Url-1 = {http://nar.oxfordjournals.org/content/40/3/e24.full}}