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- - [`contigfarmer.pdf`](contigfarmer.pdf): My undergraduate thesis
- describing "Contig Farmer", a method to extend contigs with
- overlapping reads when memory is too limited to perform a complete
- *de novo* assembly of the whole data set
- - [`blast-slides.pdf`](blast-slides.pdf): A presentation explaining
- the basic principles of optimal and heuristic sequence alignment
- - [`probe-selection.R.html`](probe-selection.R.html): R code to select
- the 3 most informative probes for each gene in a custom-designed
- microarray for a non-model organism
- - [`math-history-paper.pdf`](math-history-paper.pdf): My final paper
- for History of Methematics class
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