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- - [`delox.R.html`](delox.R.html): The R code
- for
- [Deloxer](https://academic.oup.com/nar/article/40/3/e24/1128321/Illumina-mate-paired-DNA-sequencing-library)
- - [`depth-consistency.pdf`](depth-consistency.pdf): Visualization of
- consistency of coverage depth between 2 Exome sequencing replicates
- - [`illumina-qc.html`](illumina-qc.html): QC chart indicating quality
- score dropoff along read length for exome sequencing data set.
- - [`ipi-results-small.txt`](ipi-results-small.txt): A sample of output
- showing alignment of *de novo* assembled black rhino and white rhino
- transcript sequences to human proteins. This was used to find
- differences between the two rhino species in otherwise conserved
- regions.
- - [`mirna-results.html`](mirna-results.html): Example output from
- miRNA binding site predictions
- - [`neartarget.pdf`](neartarget.pdf): Visualization of mean coverage
- depth in exome sequencing data in the regions flanking the probe
- targets.
- - [`on-off-coverage.pdf`](on-off-coverage.pdf): Relationship between
- covered on-target bases and covered off-target bases in exome-seq
- data, with varying extensions of the target region to allow for
- "near-target" capture.
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