resume/examples/Gaasterland

This folder contains some examples of my work in the Gaasterland Lab.

- [`delox.R.html`](delox.R.html): The R code
for
[Deloxer](https://academic.oup.com/nar/article/40/3/e24/1128321/Illumina-mate-paired-DNA-sequencing-library)
- [`depth-consistency.pdf`](depth-consistency.pdf): Visualization of
consistency of coverage depth between 2 Exome sequencing replicates
- [`illumina-qc.html`](illumina-qc.png): QC chart indicating quality
score dropoff along read length for exome sequencing data set.
- [`mirna-results.html`](mirna-results.html): Example output from
miRNA binding site predictions
- [`neartarget.pdf`](neartarget.pdf): Visualization of mean coverage
depth in exome sequencing data in the regions flanking the probe
targets.
- [`on-off-coverage.pdf`](on-off-coverage.pdf): Relationship between
covered on-target bases and covered off-target bases in exome-seq
data, with varying extensions of the target region to allow for
"near-target" capture.