• delox.R.html: The R code for Deloxer
• depth-consistency.pdf: Visualization of consistency of coverage depth between 2 Exome sequencing replicates
• illumina-qc.html: QC chart indicating quality score dropoff along read length for exome sequencing data set.
• ipi-results-small.txt: A sample of output showing alignment of de novo assembled black rhino and white rhino transcript sequences to human proteins. This was used to find differences between the two rhino species in otherwise conserved regions.
• mirna-results.html: Example output from miRNA binding site predictions
• neartarget.pdf: Visualization of mean coverage depth in exome sequencing data in the regions flanking the probe targets.
• on-off-coverage.pdf: Relationship between covered on-target bases and covered off-target bases in exome-seq data, with varying extensions of the target region to allow for "near-target" capture.