Ryan C. Thompson and Rushton, Paul J. and Laudeman, Tom W. and Timko, Michael P., "http://mneme.homenet.org/~ryan/resume/examples/UVa/contigfarmer.pdfContig Farmer: a tool for extracting maximal-le…" (2009).
Kurian, Sunil and Velazquez, Enrique and Ryan Thompson and Whisenant, Thomas and Rose, Stanley and Riley, Nicole and H…, "Orthogonal Comparison of Molecular Signatures of Kidney Transplants with Subclinical and Clinical Acute Rejection -- Equivalent…", American Journal of Transplantation (2017).
Ryan C. Thompson and Gelbart, Terri and Head, Steven R. and Ordoukhanian, Phillip and Mullen, Courtney and Han, Dong…, "Optimizing yield of deep RNA sequencing for gene expression profiling of peripheral blood samples from cynomolgus monkeys (…", Journal of Biological Methods (in review) (2016).
Kurian, SM and Williams, AN and Gelbart, T and Campbell, D and Mondala, TS and Head, SR and Horvath, S and Gaber, L and …, "Molecular Classifiers for Acute Kidney Transplant Rejection in Peripheral Blood by Whole Genome Gene Expression Profiling", American Journal of Transplantation (2014), 1164--1172.
LaMere, Sarah and Ryan C. Thompson and Komori, H. Kiyomi and Mark, Adam and Salomon, Daniel R., "Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cells", Genes & Immunity (2016).
LaMere, Sarah and Ryan C. Thompson and Meng, Xiangzhi and Komori, H. Kiyomi and Mark, A. and Salomon, Daniel R., "H3K27 methylation dynamics during CD4 T cell activation: regulation of JAK/STAT and IL12RB2 expression by JMJD3", Journal of Immunology (in review) (2017).
Ryan C. Thompson, "http://mneme.homenet.org/~ryan/resume/examples/UVa/math-history-paper.pdfThe sources and limits of geometric rigor fro…" (2008).
Rangaraju, Sunitha and Solis, Gregory M and Ryan C Thompson and Gomez-Amaro, Rafael L and Kurian, Leo and Encalada, …, "Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality", eLife (2015).
Scott, Erick R. and Larman, H. Benjamin and Torkamani, Ali and Schork, Nicholas J. and Wineinger, Nathan and Nanis, Max and ͡…, "RASLseqTools: open-source methods for designing and analyzing RNA-mediated oligonucleotide Annealing, Selection, and, Liga…", Nucleic Acids Research (in review) (2016).
Van Nieuwerburgh, Filip and Ryan C. Thompson and Ledesma, Jessica and Deforce, Dieter and Gaasterland, Terry and O…, "Illumina Mate-Paired DNA Sequencing Library Preparation Using Cre-Lox Recombination", Nucleic Acids Research (2011), gkr1000.
