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@@ -43,14 +43,14 @@ and you can view some presentation slides based on this analysis
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[here][3].
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[here][3].
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[2]: https://github.com/DarwinAwardWinner/CD4-csaw
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[2]: https://github.com/DarwinAwardWinner/CD4-csaw
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-[3]:
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+[3]: ./ChIP-Seq presentation.pdf
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- [`CCF-plots.pdf`](CCF-plots.pdf) shows the cross-correlation
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- [`CCF-plots.pdf`](CCF-plots.pdf) shows the cross-correlation
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functions of several different histone marks, at several different
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functions of several different histone marks, at several different
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levels of smoothing. This plot is used to determine the fragment
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levels of smoothing. This plot is used to determine the fragment
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- size. You can also observe from the periodic wave-like pattern that
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- multiple adjacent histones tend to share the same histone
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- modification.
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+ size. You can also observe from the periodic wave-like pattern,
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+ indicating that multiple adjacent histones tend to share the same
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+ histone modification.
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- [`site-profile-plots.pdf`](site-profile-plots.pdf) shows plots of
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- [`site-profile-plots.pdf`](site-profile-plots.pdf) shows plots of
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the relative coverage depth profiles around local coverage maxima.
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the relative coverage depth profiles around local coverage maxima.
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This plot is used to determine the footprint size of the protein
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This plot is used to determine the footprint size of the protein
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