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@@ -143,7 +143,7 @@ Summary
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Accomplished, experienced computational biologist with deep knowledge of
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Accomplished, experienced computational biologist with deep knowledge of
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biology, mathematics, statistics, and programming
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biology, mathematics, statistics, and programming
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\begin_inset Note Note
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\begin_inset Note Note
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-status open
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+status collapsed
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\begin_layout Plain Layout
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\begin_layout Plain Layout
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Underplays math/stats knowledge?
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Underplays math/stats knowledge?
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@@ -185,66 +185,134 @@ Supportive team member with a strong ability to foster cross-disciplinary
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Education
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Education
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\end_layout
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\end_layout
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-\begin_layout Description
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-The
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-\begin_inset space \space{}
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-\end_inset
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+\begin_layout Standard
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+\begin_inset Flex Years
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+status open
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+
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+\begin_layout Plain Layout
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+2019
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+\end_layout
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-Scripps
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-\begin_inset space \space{}
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\end_inset
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\end_inset
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-Research
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-\begin_inset space \space{}
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+
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+\series bold
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+Ph.
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+\begin_inset space \thinspace{}
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\end_inset
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\end_inset
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-Institute
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-\begin_inset space \hfill{}
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+D.
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+ in Bioinformatics
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+\series default
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+,
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+\begin_inset CommandInset href
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+LatexCommand href
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+name "Skaggs Graduate School of Chemical and Biological Sciences"
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+target "https://education.scripps.edu/graduate/about-the-graduate-school/"
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+literal "false"
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+
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\end_inset
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\end_inset
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-
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+,
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+\series bold
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+The Scripps Research Institute
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+\series default
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+, La Jolla, California
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\begin_inset Newline newline
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\begin_inset Newline newline
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\end_inset
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\end_inset
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-Ph.
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- D.
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- in Bioinformatics, 2019
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-\end_layout
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-\begin_layout Description
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-University
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-\begin_inset space \space{}
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-\end_inset
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+\size small
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+Dissertation:
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+\begin_inset CommandInset href
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+LatexCommand href
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+name "Bioinformatic analysis of complex, high-throughput genomic and epigenomic data in the context of CD4$^{+}$ T-cell differentiation and diagnosis and treatment of transplant rejection"
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+target "https://mneme.dedyn.io/~ryan/Thesis/thesis-final.pdf"
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+literal "true"
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-of
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-\begin_inset space \space{}
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\end_inset
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\end_inset
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-Virginia
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-\begin_inset space \hfill{}
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+
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+\begin_inset Note Note
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+status collapsed
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+
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+\begin_layout Plain Layout
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+
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+\size small
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+Update this link to one in the resume repo when possible
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+\end_layout
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+
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\end_inset
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\end_inset
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\begin_inset Newline newline
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\begin_inset Newline newline
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\end_inset
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-B.S.
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- in Biology, B.A.
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- in Mathematics, 2009
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-\begin_inset Note Note
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+Advisor:
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+\begin_inset CommandInset href
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+LatexCommand href
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+name "Andrew Su"
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+target "http://sulab.org/author/andrew-i-su/"
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+literal "false"
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+
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+\end_inset
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+
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+
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+\end_layout
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+
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+\begin_layout Standard
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+\begin_inset Flex Years
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status open
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status open
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\begin_layout Plain Layout
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\begin_layout Plain Layout
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-Mention high distinction
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+2009
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\end_layout
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\end_layout
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\end_inset
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\end_inset
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+
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+\series bold
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+B.
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+\begin_inset space \thinspace{}
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+\end_inset
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+
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+S.
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+ in Biology with High Distinction; B.
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+\begin_inset space \thinspace{}
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+\end_inset
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+
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+A.
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+ in Mathematics, University of Virginia
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+\series default
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+, Charlottesville, Virginia
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+\begin_inset Newline newline
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+\end_inset
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+
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+
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+\size small
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+Undergraduate thesis:
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+\begin_inset CommandInset href
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+LatexCommand href
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+name "Contig Farmer: A tool for extracting maximal-length contiguous Sequences from a Database of Short Sequence Reads"
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+target "http://darwinawardwinner.github.io/resume/examples/UVa/contigfarmer.pdf"
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+literal "false"
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+
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+\end_inset
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+
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\begin_inset Newline newline
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\begin_inset Newline newline
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\end_inset
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\end_inset
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-Echols Scholar
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+Advisor:
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+\begin_inset CommandInset href
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+LatexCommand href
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+name "Paul J. Rushton"
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+target "https://therushtonlab.wordpress.com/"
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+literal "false"
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+
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+\end_inset
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+
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+
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\end_layout
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\end_layout
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\begin_layout Section
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\begin_layout Section
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@@ -378,9 +446,9 @@ literal "false"
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\end_layout
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\end_layout
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\begin_layout Itemize
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\begin_layout Itemize
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-Significantly improved performance of machine learning classifier for identifyin
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-g transplant rejection by developing appropriate single-sample microarray
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- normalization procedures
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+Significantly improved cross-validated performance of machine learning classifie
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+r for identifying biomarkers of transplant rejection by developing appropriate
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+ single-sample microarray normalization procedures
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\begin_inset CommandInset citation
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\begin_inset CommandInset citation
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LatexCommand cite
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LatexCommand cite
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key "kurian2014molecular"
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key "kurian2014molecular"
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@@ -391,17 +459,6 @@ literal "true"
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, including training a custom set of frozen RMA normalization vectors.
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, including training a custom set of frozen RMA normalization vectors.
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Classifier is currently being developed into a clinical test for transplant
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Classifier is currently being developed into a clinical test for transplant
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dysfunction.
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dysfunction.
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-
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|
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-\begin_inset Note Note
|
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|
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-status open
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-
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-\begin_layout Plain Layout
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|
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-Work in the word biomarker, cross validation
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-\end_layout
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-
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-\end_inset
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-
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-
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\begin_inset Newline newline
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\begin_inset Newline newline
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\end_inset
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\end_inset
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