CV Tweaks

Snakefile

@@ -160,7 +160,9 @@ all_example_files = all_example_files.union(index_files)
 all_example_files = all_example_files.union(r_html_files)
 
 rule build_all:
-    input: 'ryan_thompson_resume.pdf', 'ryan_thompson_resume.html', 'index.html', index_files, r_html_files
+    input: 'ryan_thompson_resume.pdf', 'ryan_thompson_resume.html',
+           'ryan_thompson_cv.pdf', 'ryan_thompson_cv.html',
+           'index.html', index_files, r_html_files
 
 rule create_resume_pdf:
     input: lyxfile='ryan_thompson_resume.lyx',
@@ -251,6 +253,8 @@ shortest URL is kept.'''
                 if m:
                     authors[i] = f"\\textbf{{{m.group(1)} Thompson}}"
             entry['author'] = ' and '.join(authors)
+            # Fix CD4+ formatting (superscript plus sign)
+            entry['title'] = regex.sub('CD4\\+', 'CD4$^{+}$', entry['title'])
         new_db = BibDatabase()
         new_db.entries = entries
         with open(output[0], 'w') as outfile:

ryan_thompson_cv.lyx

@@ -158,7 +158,7 @@ Clear any existing headers
 
 \end_layout
 
-\begin_layout Left Header
+\begin_layout Center Header
 Ryan C.
  Thompson, Ph.
 \begin_inset space \thinspace{}
@@ -167,7 +167,7 @@ Ryan C.
 D.
 \end_layout
 
-\begin_layout Right Header
+\begin_layout Center Footer
 \begin_inset ERT
 status open
 
@@ -206,7 +206,7 @@ status open
 \backslash
 fancypagestyle{plain}{
 \backslash
-lhead{}}
+chead{}}
 \end_layout
 
 \begin_layout Plain Layout
@@ -407,7 +407,7 @@ literal "false"
 \end_layout
 
 \begin_layout Section
-Awards & Honors
+Professional Experience
 \end_layout
 
 \begin_layout Standard
@@ -415,21 +415,22 @@ Awards & Honors
 status open
 
 \begin_layout Plain Layout
-2006—2009
+2010—2012
 \end_layout
 
 \end_inset
 
- 
-\begin_inset CommandInset href
-LatexCommand href
-name "Echols Scholar"
-target "http://echols.as.virginia.edu/front"
-literal "false"
+ Gaasterland Lab, University of California San Diego, San Diego,
+\begin_inset space ~
+\end_inset
 
+CA
+\begin_inset Newline newline
 \end_inset
 
-, University of Virginia
+
+\size small
+Advisor: Terry Gaasterland
 \end_layout
 
 \begin_layout Standard
@@ -437,21 +438,23 @@ literal "false"
 status open
 
 \begin_layout Plain Layout
-2006
+2011
 \end_layout
 
 \end_inset
 
+ Summer Bioinformatics Internship, Informatics & IT Department, Merck &
+ Co., Boston,
+\begin_inset space ~
+\end_inset
 
-\begin_inset CommandInset href
-LatexCommand href
-name "Phi Eta Sigma National Honor Society"
-target "https://www.phietasigma.org/"
-literal "false"
-
+MA
+\begin_inset Newline newline
 \end_inset
 
 
+\size small
+Advisor: Adnan Derti
 \end_layout
 
 \begin_layout Standard
@@ -459,21 +462,16 @@ literal "false"
 status open
 
 \begin_layout Plain Layout
-2006
+2006—2009
 \end_layout
 
 \end_inset
 
-
-\begin_inset CommandInset href
-LatexCommand href
-name "National Society of Collegiate Scholars"
-target "https://nscs.org/"
-literal "false"
-
+ Summer Sailing Instructor, Raritan Yacht Club, Perth Amboy,
+\begin_inset space ~
 \end_inset
 
-
+NJ
 \end_layout
 
 \begin_layout Standard
@@ -481,13 +479,21 @@ literal "false"
 status open
 
 \begin_layout Plain Layout
-2005
+2005—2007
 \end_layout
 
 \end_inset
 
-Edward J.
- Bloustein Disguingished Scholar
+ Computing Advisor & Help Desk, Information, Technology, & Communication
+ Department, University of Virginia, Charlottesville,
+\begin_inset space ~
+\end_inset
+
+VA
+\end_layout
+
+\begin_layout Section
+Awards & Honors
 \end_layout
 
 \begin_layout Standard
@@ -495,25 +501,21 @@ Edward J.
 status open
 
 \begin_layout Plain Layout
-2005
+2006—2009
 \end_layout
 
 \end_inset
 
-
+ 
 \begin_inset CommandInset href
 LatexCommand href
-name "National Merit Scholar"
-target "https://www.nationalmerit.org/"
+name "Echols Scholar"
+target "http://echols.as.virginia.edu/front"
 literal "false"
 
 \end_inset
 
-
-\end_layout
-
-\begin_layout Section
-Professional Experience
+, University of Virginia
 \end_layout
 
 \begin_layout Standard
@@ -521,22 +523,21 @@ Professional Experience
 status open
 
 \begin_layout Plain Layout
-2010—2012
+2006
 \end_layout
 
 \end_inset
 
- Gaasterland Lab, University of California San Diego, San Diego,
-\begin_inset space ~
-\end_inset
 
-CA
-\begin_inset Newline newline
+\begin_inset CommandInset href
+LatexCommand href
+name "Phi Eta Sigma National Honor Society"
+target "https://www.phietasigma.org/"
+literal "false"
+
 \end_inset
 
 
-\size small
-Advisor: Terry Gaasterland
 \end_layout
 
 \begin_layout Standard
@@ -544,23 +545,21 @@ Advisor: Terry Gaasterland
 status open
 
 \begin_layout Plain Layout
-2011
+2006
 \end_layout
 
 \end_inset
 
- Summer Bioinformatics Internship, Informatics & IT Department, Merck &
- Co., Boston,
-\begin_inset space ~
-\end_inset
 
-MA
-\begin_inset Newline newline
+\begin_inset CommandInset href
+LatexCommand href
+name "National Society of Collegiate Scholars"
+target "https://nscs.org/"
+literal "false"
+
 \end_inset
 
 
-\size small
-Advisor: Adnan Derti
 \end_layout
 
 \begin_layout Standard
@@ -568,16 +567,13 @@ Advisor: Adnan Derti
 status open
 
 \begin_layout Plain Layout
-2006—2009
+2005
 \end_layout
 
 \end_inset
 
- Summer Sailing Instructor, Raritan Yacht Club, Perth Amboy,
-\begin_inset space ~
-\end_inset
-
-NJ
+Edward J.
+ Bloustein Disguingished Scholar
 \end_layout
 
 \begin_layout Standard
@@ -585,21 +581,32 @@ NJ
 status open
 
 \begin_layout Plain Layout
-2005—2007
+2005
 \end_layout
 
 \end_inset
 
- Computing Advisor & Help Desk, Information, Technology, & Communication
- Department, University of Virginia, Charlottesville,
-\begin_inset space ~
+
+\begin_inset CommandInset href
+LatexCommand href
+name "National Merit Scholar"
+target "https://www.nationalmerit.org/"
+literal "false"
+
 \end_inset
 
-VA
+
+\end_layout
+
+\begin_layout Standard
+\begin_inset Newpage pagebreak
+\end_inset
+
+
 \end_layout
 
 \begin_layout Section
-Writings and Publications
+Peer-reviewed Publications
 \end_layout
 
 \begin_layout Standard
@@ -670,7 +677,7 @@ endgroup
 \end_layout
 
 \begin_layout Section
-Unpublished works
+Other Works
 \end_layout
 
 \begin_layout Standard
@@ -727,7 +734,7 @@ endgroup
 \end_layout
 
 \begin_layout Section
-Presentations & Teaching
+Presentations and Teaching
 \end_layout
 
 \begin_layout Standard
@@ -865,11 +872,20 @@ literal "false"
 
 \end_inset
 
+, software developer and 
+\begin_inset CommandInset href
+LatexCommand href
+name "technical support"
+target "https://support.bioconductor.org/u/5618/"
+literal "false"
+
+\end_inset
+
 
 \end_layout
 
 \begin_layout Section
-Interests 
+Interests & Hobbies
 \end_layout
 
 \begin_layout Itemize