|
@@ -11,7 +11,7 @@ Email: rct@thompsonclan.org
|
|
Website: https://github.com/DarwinAwardWinner
|
|
Website: https://github.com/DarwinAwardWinner
|
|
|
|
|
|
Summary
|
|
Summary
|
|
-=======
|
|
|
|
|
|
+==========
|
|
|
|
|
|
* Well-rounded computational biologist with deep knowledge of biology,
|
|
* Well-rounded computational biologist with deep knowledge of biology,
|
|
mathematics, and programming
|
|
mathematics, and programming
|
|
@@ -26,7 +26,7 @@ Summary
|
|
level of abstraction
|
|
level of abstraction
|
|
|
|
|
|
Education
|
|
Education
|
|
-=========
|
|
|
|
|
|
+==========
|
|
|
|
|
|
The Scripps Research Institute
|
|
The Scripps Research Institute
|
|
|
|
|
|
@@ -38,12 +38,12 @@ University of Virginia
|
|
* Echols Scholar
|
|
* Echols Scholar
|
|
|
|
|
|
Research Experience
|
|
Research Experience
|
|
-===================
|
|
|
|
|
|
+==========
|
|
|
|
|
|
Salomon Lab, The Scripps Research Institute
|
|
Salomon Lab, The Scripps Research Institute
|
|
--------------------------------------------
|
|
|
|
-La Jolla, CA 2012 - 2017
|
|
|
|
-
|
|
|
|
|
|
+----------
|
|
|
|
+La Jolla, CA; 2012 - 2017
|
|
|
|
+
|
|
Contact: Dr. Andrew Su, asu@scripps.edu
|
|
Contact: Dr. Andrew Su, asu@scripps.edu
|
|
|
|
|
|
* Created an open source, reproducible workflow to analyze a large
|
|
* Created an open source, reproducible workflow to analyze a large
|
|
@@ -88,11 +88,10 @@ Contact: Dr. Andrew Su, asu@scripps.edu
|
|
* Mentored 2 coworkers in learning bioinformatics.
|
|
* Mentored 2 coworkers in learning bioinformatics.
|
|
|
|
|
|
Summer Internship, Informatics IT, Merck & Co.
|
|
Summer Internship, Informatics IT, Merck & Co.
|
|
-----------------------------------------------
|
|
|
|
-Boston, MA 2011
|
|
|
|
|
|
+----------
|
|
|
|
+Boston, MA; 2011
|
|
|
|
|
|
-Contact:
|
|
|
|
- Adnan Derti, adnan.derti@gmail.com
|
|
|
|
|
|
+Contact: Adnan Derti, adnan.derti@gmail.com
|
|
|
|
|
|
* Built a transcriptome assembly and quantification pipeline using
|
|
* Built a transcriptome assembly and quantification pipeline using
|
|
Cufflinks, including fully-automated cluster job control for
|
|
Cufflinks, including fully-automated cluster job control for
|
|
@@ -104,8 +103,8 @@ Contact:
|
|
antibiotic-resistant bacterial genomes.
|
|
antibiotic-resistant bacterial genomes.
|
|
|
|
|
|
Gaasterland Lab, UCSD Bioinformatcs
|
|
Gaasterland Lab, UCSD Bioinformatcs
|
|
------------------------------------
|
|
|
|
-La Jolla, CA 2010 - 2012
|
|
|
|
|
|
+----------
|
|
|
|
+La Jolla, CA; 2010 - 2012
|
|
|
|
|
|
Contact: Terry Gaasterland, gaasterland@ucsd.edu
|
|
Contact: Terry Gaasterland, gaasterland@ucsd.edu
|
|
|
|
|
|
@@ -135,8 +134,8 @@ Contact: Terry Gaasterland, gaasterland@ucsd.edu
|
|
identify target pathways of autophagy-related miRNAs for biological validation.
|
|
identify target pathways of autophagy-related miRNAs for biological validation.
|
|
|
|
|
|
Timko Lab, U. of Virginia Biology
|
|
Timko Lab, U. of Virginia Biology
|
|
----------------------------------
|
|
|
|
-Charlottesville, VA 2007 - 2009
|
|
|
|
|
|
+----------
|
|
|
|
+Charlottesville, VA; 2007 - 2009
|
|
|
|
|
|
Contact: Paul J. Rushton, Paul.Rushton@sdstate.edu
|
|
Contact: Paul J. Rushton, Paul.Rushton@sdstate.edu
|
|
|
|
|
|
@@ -155,7 +154,7 @@ Contact: Paul J. Rushton, Paul.Rushton@sdstate.edu
|
|
biologists.
|
|
biologists.
|
|
|
|
|
|
Skills
|
|
Skills
|
|
-======
|
|
|
|
|
|
+==========
|
|
|
|
|
|
Computing Skills: R/BioConductor, Python, Perl, Lisp, Java, C#, C++;
|
|
Computing Skills: R/BioConductor, Python, Perl, Lisp, Java, C#, C++;
|
|
Git version control; Remote UNIX system administration & software
|
|
Git version control; Remote UNIX system administration & software
|
|
@@ -178,9 +177,9 @@ and associated data analysis
|
|
Languages: English: native speaker; German: written and spoken
|
|
Languages: English: native speaker; German: written and spoken
|
|
|
|
|
|
Other Work Experience
|
|
Other Work Experience
|
|
-=====================
|
|
|
|
|
|
+==========
|
|
|
|
|
|
-Computing Advisor & Help Desk, U. Va. IT Dept. Charlottesville, VA 2005 - 2007
|
|
|
|
|
|
+Computing Advisor & Help Desk, U. Va. IT Dept. Charlottesville, VA; 2005 - 2007
|
|
|
|
|
|
* Provided support via phone and on-site for students, faculty, and
|
|
* Provided support via phone and on-site for students, faculty, and
|
|
staff having problems with computers, phone system, network access,
|
|
staff having problems with computers, phone system, network access,
|
|
@@ -189,7 +188,7 @@ Computing Advisor & Help Desk, U. Va. IT Dept. Charlottesville, VA 2005
|
|
removal, iPod recovery, printer setup and repair, diagnosis of
|
|
removal, iPod recovery, printer setup and repair, diagnosis of
|
|
hardware malfunctions, and data recovery from failing hard disks
|
|
hardware malfunctions, and data recovery from failing hard disks
|
|
|
|
|
|
-Summer Sailing Instructor, Raritan Yacht Club Perth Amboy, NJ 2006 - 2009
|
|
|
|
|
|
+Summer Sailing Instructor, Raritan Yacht Club Perth Amboy, NJ; 2006 - 2009
|
|
|
|
|
|
* Instructed children ages 8-18 in sailing skills, safety, seamanship,
|
|
* Instructed children ages 8-18 in sailing skills, safety, seamanship,
|
|
knots, rigging & de-rigging boats, navigation, and racing strategy
|
|
knots, rigging & de-rigging boats, navigation, and racing strategy
|
|
@@ -203,7 +202,7 @@ Summer Sailing Instructor, Raritan Yacht Club Perth Amboy, NJ 2006 - 2009
|
|
students from RYC and neighboring yacht clubs
|
|
students from RYC and neighboring yacht clubs
|
|
|
|
|
|
Writings and Publications
|
|
Writings and Publications
|
|
-=========================
|
|
|
|
|
|
+==========
|
|
|
|
|
|
[1] Sunil Kurian, Enrique Velazquez, Ryan Thompson, Thomas Whisenant,
|
|
[1] Sunil Kurian, Enrique Velazquez, Ryan Thompson, Thomas Whisenant,
|
|
Stanley Rose, Nicole Riley, Frank Harrison, Terri Gelbart, John
|
|
Stanley Rose, Nicole Riley, Frank Harrison, Terri Gelbart, John
|