Lamere 2017 is accepted

citations.bib

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 	Abstract = {The changes to the epigenetic landscape in response to antigen during CD4 T cell activation have not been well characterized. While CD4 T cell subsets have been mapped globally for numerous epigenetic marks, little has been done to study their dynamics early after activation. We have studied changes to promoter H3K27me3 during activation of human na{\"\i}ve and memory CD4 T cells. Our results show that these changes occur relatively early (1 day) after activation of both na{\"\i}ve and memory cells, and that H3K27 demethylation is the predominant change at this time point, reinforcing high expression of target genes. Additionally, we also examined bivalent gene promoters (i.e. those containing both H3K4me3 and H3K27me3) and show that this state is dynamic during activation with different outcomes comparing na{\"\i}ve and memory subsets, despite strong overlap between mapped functional pathways. Additionally, inhibition of the H3K27 demethylase, JMJD3, in na{\"\i}ve CD4 demonstrates how the critical JAK/STAT pathways are regulated during activation by H3K27 demethylation. Our results demonstrate that H3K27me3 is a dynamic and important epigenetic modification during CD4 T cell activation and differentiation, and that JMJD3-driven H3K27 demethylation is integral to CD4 T cell function.},
 	Author = {LaMere, Sarah and {\textbf{Ryan C. Thompson}} and Meng, Xiangzhi and Komori, H. Kiyomi and Mark, A. and Salomon, Daniel R.},
 	Date-Added = {2016-10-25 21:40:16 +0000},
-	Date-Modified = {2017-03-31 21:12:35 +0000},
-	Journal = {Journal of Immunology (in review)},
+	Date-Modified = {2017-08-25 21:16:25 +0000},
+	Journal = {Journal of Immunology (accepted)},
 	Title = {{{H3K27} methylation dynamics during {CD4} {T} cell activation: regulation of {JAK}/{STAT} and {IL12RB2} expression by {JMJD3}}},
 	Year = {2017}}
 

ryan_thompson_resume.html

@@ -272,7 +272,7 @@ StackOverflow Profile: <a href="http://stackoverflow.com/users/125921">http://st
 <div class='bibtexentry' id='LyXCite-globin_reduction'><span class='bibtexinfo'><span class="bib-author">Ryan C. Thompson and Gelbart, Terri and Head, Steven R. and Ordoukhanian, Phillip and Mullen, Courtney and Han, Dong…</span>, "<span class="bib-title">Optimizing yield of deep RNA sequencing for gene expression profiling of peripheral blood samples from cynomolgus monkeys (…</span>", <i><span class="bib-journal">Journal of Biological Methods (in review)</span></i> (<span class="bib-year">2016</span>).</span></div>
 <div class='bibtexentry' id='LyXCite-kurian2014molecular'><span class='bibtexinfo'><span class="bib-author">Kurian, SM and Williams, AN and Gelbart, T and Campbell, D and Mondala, TS and Head, SR and Horvath, S and Gaber, L and …</span>, "<span class="bib-title">Molecular Classifiers for Acute Kidney Transplant Rejection in Peripheral Blood by Whole Genome Gene Expression Profiling</span>", <i><span class="bib-journal">American Journal of Transplantation</span></i> (<span class="bib-year">2014</span>), <span class="bib-pages">1164--1172</span>.</span></div>
 <div class='bibtexentry' id='LyXCite-lamere2016'><span class='bibtexinfo'><span class="bib-author">LaMere, Sarah and Ryan C. Thompson and Komori, H. Kiyomi and Mark, Adam and Salomon, Daniel R.</span>, "<span class="bib-title">Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cells</span>", <i><span class="bib-journal">Genes &amp; Immunity</span></i> (<span class="bib-year">2016</span>).</span></div>
-<div class='bibtexentry' id='LyXCite-lamere2017_JMJD3'><span class='bibtexinfo'><span class="bib-author">LaMere, Sarah and Ryan C. Thompson and Meng, Xiangzhi and Komori, H. Kiyomi and Mark, A. and Salomon, Daniel R.</span>, "<span class="bib-title">H3K27 methylation dynamics during CD4 T cell activation: regulation of JAK/STAT and IL12RB2 expression by JMJD3</span>", <i><span class="bib-journal">Journal of Immunology (in review)</span></i> (<span class="bib-year">2017</span>).</span></div>
+<div class='bibtexentry' id='LyXCite-lamere2017_JMJD3'><span class='bibtexinfo'><span class="bib-author">LaMere, Sarah and Ryan C. Thompson and Meng, Xiangzhi and Komori, H. Kiyomi and Mark, A. and Salomon, Daniel R.</span>, "<span class="bib-title">H3K27 methylation dynamics during CD4 T cell activation: regulation of JAK/STAT and IL12RB2 expression by JMJD3</span>", <i><span class="bib-journal">Journal of Immunology (accepted)</span></i> (<span class="bib-year">2017</span>).</span></div>
 <div class='bibtexentry' id='LyXCite-math_history_paper'><span class='bibtexinfo'><span class="bib-author">Ryan C. Thompson</span>, "<span class="bib-title">http://darwinawardwinner.github.io/resume/examples/UVa/math-history-paper.pdfThe sources and limits of geometric rigor…</span>" (<span class="bib-year">2008</span>).</span></div>
 <div class='bibtexentry' id='LyXCite-Rangarajue08833'><span class='bibtexinfo'><span class="bib-author">Rangaraju, Sunitha and Solis, Gregory M and Ryan C Thompson and Gomez-Amaro, Rafael L and Kurian, Leo and Encalada, …</span>, "<span class="bib-title">Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality</span>", <i><span class="bib-journal">eLife</span></i> (<span class="bib-year">2015</span>).</span></div>
 <div class='bibtexentry' id='LyXCite-Scott036061'><span class='bibtexinfo'><span class="bib-author">Scott, Erick R. and Larman, H. Benjamin and Torkamani, Ali and Schork, Nicholas J. and Wineinger, Nathan and Nanis, Max and ͡…</span>, "<span class="bib-title">RASLseqTools: open-source methods for designing and analyzing RNA-mediated oligonucleotide Annealing, Selection, and, Liga…</span>", <i><span class="bib-journal">Nucleic Acids Research (in review)</span></i> (<span class="bib-year">2016</span>).</span></div>