Update PDF & HTML resume files

ryan_thompson_resume.html

@@ -249,7 +249,7 @@ StackOverflow Profile: <a href="http://stackoverflow.com/users/125921">http://st
 <dt class="description_label">Wet&nbsp;Lab:</dt>
 <dd class="description_item"> PCR, molecular cloning, recombinant protein purification, epitope mapping, site-directed mutagenesis, 2D gels, real-time PCR, and associated data analysis </dd>
 <dt class="description_label">Languages:</dt>
-<dd class="description_item"> English: native; German: written and spoken</dd>
+<dd class="description_item"> English: native speaker; German: written and spoken</dd>
 </dl>
 <div class="section"><a id='magicparlabel-55' /><span class="section_label"></span> Other Work Experience</div>
 <div class="subsection"><a id='magicparlabel-56' /><span class="subsection_label"></span> Computing Advisor &amp; Help Desk, U.&thinsp;Va. IT Dept.  Charlottesville, VA &emsp;&emsp; 2005 - 2007 </div>
@@ -267,13 +267,13 @@ StackOverflow Profile: <a href="http://stackoverflow.com/users/125921">http://st
 
 
 
-<div class="standard"><a id='magicparlabel-73' /><h2 class='bibtex'>References</h2><div class='bibtex'><div class='bibtexentry' id='LyXCite-cfarmer'><span class='bibtexinfo'><span class="bib-author">Ryan C. Thompson and Rushton, Paul J. and Laudeman, Tom W. and Timko, Michael P.</span>, "<span class="bib-title">http://mneme.homenet.org/~ryan/resume/examples/UVa/contigfarmer.pdfContig Farmer: a tool for extracting maximal-le…</span>" (<span class="bib-year">2009</span>).</span></div>
+<div class="standard"><a id='magicparlabel-73' /><h2 class='bibtex'>References</h2><div class='bibtex'><div class='bibtexentry' id='LyXCite-cfarmer'><span class='bibtexinfo'><span class="bib-author">Ryan C. Thompson and Rushton, Paul J. and Laudeman, Tom W. and Timko, Michael P.</span>, "<span class="bib-title">http://darwinawardwinner.github.io/resume/examples/UVa/contigfarmer.pdfContig Farmer: a tool for extracting maxima…</span>" (<span class="bib-year">2009</span>).</span></div>
 <div class='bibtexentry' id='LyXCite-eiv_2017'><span class='bibtexinfo'><span class="bib-author">Kurian, Sunil and Velazquez, Enrique and Ryan Thompson and Whisenant, Thomas and Rose, Stanley and Riley, Nicole and H…</span>, "<span class="bib-title">Orthogonal Comparison of Molecular Signatures of Kidney Transplants with Subclinical and Clinical Acute Rejection -- Equivalent…</span>", <i><span class="bib-journal">American Journal of Transplantation</span></i> (<span class="bib-year">2017</span>).</span></div>
 <div class='bibtexentry' id='LyXCite-globin_reduction'><span class='bibtexinfo'><span class="bib-author">Ryan C. Thompson and Gelbart, Terri and Head, Steven R. and Ordoukhanian, Phillip and Mullen, Courtney and Han, Dong…</span>, "<span class="bib-title">Optimizing yield of deep RNA sequencing for gene expression profiling of peripheral blood samples from cynomolgus monkeys (…</span>", <i><span class="bib-journal">Journal of Biological Methods (in review)</span></i> (<span class="bib-year">2016</span>).</span></div>
 <div class='bibtexentry' id='LyXCite-kurian2014molecular'><span class='bibtexinfo'><span class="bib-author">Kurian, SM and Williams, AN and Gelbart, T and Campbell, D and Mondala, TS and Head, SR and Horvath, S and Gaber, L and …</span>, "<span class="bib-title">Molecular Classifiers for Acute Kidney Transplant Rejection in Peripheral Blood by Whole Genome Gene Expression Profiling</span>", <i><span class="bib-journal">American Journal of Transplantation</span></i> (<span class="bib-year">2014</span>), <span class="bib-pages">1164--1172</span>.</span></div>
 <div class='bibtexentry' id='LyXCite-lamere2016'><span class='bibtexinfo'><span class="bib-author">LaMere, Sarah and Ryan C. Thompson and Komori, H. Kiyomi and Mark, Adam and Salomon, Daniel R.</span>, "<span class="bib-title">Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cells</span>", <i><span class="bib-journal">Genes &amp; Immunity</span></i> (<span class="bib-year">2016</span>).</span></div>
 <div class='bibtexentry' id='LyXCite-lamere2017_JMJD3'><span class='bibtexinfo'><span class="bib-author">LaMere, Sarah and Ryan C. Thompson and Meng, Xiangzhi and Komori, H. Kiyomi and Mark, A. and Salomon, Daniel R.</span>, "<span class="bib-title">H3K27 methylation dynamics during CD4 T cell activation: regulation of JAK/STAT and IL12RB2 expression by JMJD3</span>", <i><span class="bib-journal">Journal of Immunology (in review)</span></i> (<span class="bib-year">2017</span>).</span></div>
-<div class='bibtexentry' id='LyXCite-math_history_paper'><span class='bibtexinfo'><span class="bib-author">Ryan C. Thompson</span>, "<span class="bib-title">http://mneme.homenet.org/~ryan/resume/examples/UVa/math-history-paper.pdfThe sources and limits of geometric rigor fro…</span>" (<span class="bib-year">2008</span>).</span></div>
+<div class='bibtexentry' id='LyXCite-math_history_paper'><span class='bibtexinfo'><span class="bib-author">Ryan C. Thompson</span>, "<span class="bib-title">http://darwinawardwinner.github.io/resume/examples/UVa/math-history-paper.pdfThe sources and limits of geometric rigor…</span>" (<span class="bib-year">2008</span>).</span></div>
 <div class='bibtexentry' id='LyXCite-Rangarajue08833'><span class='bibtexinfo'><span class="bib-author">Rangaraju, Sunitha and Solis, Gregory M and Ryan C Thompson and Gomez-Amaro, Rafael L and Kurian, Leo and Encalada, …</span>, "<span class="bib-title">Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality</span>", <i><span class="bib-journal">eLife</span></i> (<span class="bib-year">2015</span>).</span></div>
 <div class='bibtexentry' id='LyXCite-Scott036061'><span class='bibtexinfo'><span class="bib-author">Scott, Erick R. and Larman, H. Benjamin and Torkamani, Ali and Schork, Nicholas J. and Wineinger, Nathan and Nanis, Max and ͡…</span>, "<span class="bib-title">RASLseqTools: open-source methods for designing and analyzing RNA-mediated oligonucleotide Annealing, Selection, and, Liga…</span>", <i><span class="bib-journal">Nucleic Acids Research (in review)</span></i> (<span class="bib-year">2016</span>).</span></div>
 <div class='bibtexentry' id='LyXCite-van2011illumina'><span class='bibtexinfo'><span class="bib-author">Van Nieuwerburgh, Filip and Ryan C. Thompson and Ledesma, Jessica and Deforce, Dieter and Gaasterland, Terry and O…</span>, "<span class="bib-title">Illumina Mate-Paired DNA Sequencing Library Preparation Using Cre-Lox Recombination</span>", <i><span class="bib-journal">Nucleic Acids Research</span></i> (<span class="bib-year">2011</span>), <span class="bib-pages">gkr1000</span>.</span></div>