Remove some extraneous code from examples

examples/Salomon/fRMA/consistency-train.R

@@ -36,10 +36,6 @@ parse.date.from.filename <- function(fname) {
     as.Date(do.call(ISOdate, data.frame(res1)))
 }
 
-## Error: the following are not valid files:
-##     Training Data/03 - TGCG ARADNRCANTX PAX Samples/10733.CEL
-blacklist <- "Training Data/03 - TGCG ARADNRCANTX PAX Samples/10733.CEL"
-
 ## This reads in the xlsx file for each of the 7 datasets and combines
 ## them into one big table of all samples. The Batch column contains
 ## the partitioning of samples into unique combinations of Dataset,

examples/Salomon/fRMA/test.R

@@ -27,10 +27,6 @@ parse.date.from.filename <- function(fname) {
     as.Date(do.call(ISOdate, data.frame(res1)))
 }
 
-## Error: the following are not valid files:
-##     Training Data/03 - TGCG ARADNRCANTX PAX Samples/10733.CEL
-blacklist <- "Training Data/03 - TGCG ARADNRCANTX PAX Samples/10733.CEL"
-
 sample.tables <- ddply(datasets, .(Dataset), function(df) {
     df <- df[1,]
     rownames(df) <- NULL

examples/Salomon/fRMA/train.R

@@ -141,11 +141,6 @@ makeVectorsAffyBatch <- function (files, batch.id, background = "rma", normalize
         version = vers))
 }
 
-
-## Error: the following are not valid files:
-##     Training Data/03 - TGCG ARADNRCANTX PAX Samples/10733.CEL
-blacklist <- "Training Data/03 - TGCG ARADNRCANTX PAX Samples/10733.CEL"
-
 ## This reads in the xlsx file for each of the 7 datasets and combines
 ## them into one big table of all samples. The Batch column contains
 ## the partitioning of samples into unique combinations of Dataset,