# Ryan Thompson's Thesis

**Title:** Bioinformatic analysis of complex, high-throughput genomic and epigenomic data in the context of CD4+ T-cell differentiation and diagnosis and treatment of transplant rejection

* Final thesis document: https://mneme.dedyn.io/~ryan/Thesis/thesis-final.pdf
* Defense slides: https://mneme.dedyn.io/~ryan/Thesis/presentation.pdf

The PDFs are generated from the LyX/LaTeX source and a bunch of
supporting files using the
[Snakemake](https://snakemake.readthedocs.io/en/stable/) build tool.